12 Feb 2015 You can view and download the data from this link — but if you're having timeout issues, I've also posted a ZIP file with the JSON as well as a
Specific requirements: 1. Breast, lung, and melanoma cancer data download from TCGA 2. log2(x+1) transformed RSEM normalized count (TCGA) in excel data sheet (compatible to R and DEseq bioconductor). Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence - openvax/isovar Make it easy to log the definitions of all your tables, views, and functions. - simnim/schema_logging ###2. Method two: Upload a CSV file containing list of local urls: Let's assume our name of our dataset is TCGA-CA-G4H2. This dataset has three folders: 1. Folder name "Drive" with jpeg files 2. qbyfileid.json: Script para hacer el query a "The Cancer Genome Atlas" (TCGA) y obtener los CaseID a partir de los archivos manifest. A list of useful bioinformatics resources. Contribute to jdidion/biotools development by creating an account on GitHub. Background Transcription factors and microRNAs play a critical role in regulating the gene expression in normal physiology and pathological conditions. Many bioinformatics tools were built to predict and identify transcription factor and…
Pipeline to reproduce PaccMann^RL results. Contribute to PaccMann/paccmann_rl development by creating an account on GitHub. Extension for Jupyter Notebook which integrates igv.js - igvteam/igv-jupyter Dockerfile for loader docker container. Includes uAIMLoader and ImageLoader. - camicroscope/LoaderDockerContainer A step to step guide on mining cancer biomarker based on microRNA data and tissue specificity of disease) + Molecular Pathway Investigation - stefanuswibowo/miTS_Pathway GridVar is a jQuery plugin that visualizes multi-dimensional datasets as layers organized in a row-column format. - Novartis/gridvar The “bidirectional gene pair” indicates a particular head-to-head gene organization in which transcription start sites of two genes are located on opposite strands of genomic DNA within a region of one kb.
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R - sbg/sevenbridges-r Integration of GDCWebApp service in Galaxy as an asynchronous Data Source - fabio-cumbo/GDCWebApp4Galaxy Repository for the NCI Cloud Pilot Workshop on May 24-25, 2016 - sbg/nci-workshop 1 - Download Pcawg tools git clone https://github.com/ucscCancer/pcawg_tools.git This directory will be referred to at $Pcawg_DIR You probably want to put $Pcawg_DIR in your .bashrc file 2- Checkout deployment version: cd $Pcawg_DIR && git… Tremendous amount of whole-genome sequencing data have been provided by large consortium projects such as TCGA (The Cancer Genome Atlas), Cosmic and so on, which creates incredible opportunities for functional gene research and cancer…
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R - sbg/sevenbridges-r Integration of GDCWebApp service in Galaxy as an asynchronous Data Source - fabio-cumbo/GDCWebApp4Galaxy Repository for the NCI Cloud Pilot Workshop on May 24-25, 2016 - sbg/nci-workshop 1 - Download Pcawg tools git clone https://github.com/ucscCancer/pcawg_tools.git This directory will be referred to at $Pcawg_DIR You probably want to put $Pcawg_DIR in your .bashrc file 2- Checkout deployment version: cd $Pcawg_DIR && git… Tremendous amount of whole-genome sequencing data have been provided by large consortium projects such as TCGA (The Cancer Genome Atlas), Cosmic and so on, which creates incredible opportunities for functional gene research and cancer…
Pipeline to reproduce PaccMann^RL results. Contribute to PaccMann/paccmann_rl development by creating an account on GitHub.
